CHASE-ING MICROBES
  • Home
  • Recent News
  • Research Projects
  • Lab Members
  • Publications
  • Blog
  • Contact

in review or preprint

S Adak, AB Chase, BS Moore, and AL Lukowski. Metagenomic identification of brominated indole biosynthetic machinery from cyanobacteria. Journal of Natural Products​ (In revision)
I Burkhardt, HK Bone, NE Grayson, H Leucke, J Gutleben, PR Jensen, AM Quattrini, AB Chase, and BS Moore. Diversification of diterpene biosynthesis occurred early in octocoral evolution. Proceedings of the National Academy of Sciences (In review).
A Simpson, AB Chase, A Rodríguez-Verdugo, and JBH Martiny. Studying microbial evolution in nature with metagenomics. Current Opinion in Microbiology (Invited to submit)
HW Singh, J Gutleben, A Bogdanov, AB Chase, A Demko, S Podell, B Haley, and PR Jensen. Multi-omic assessment of polyketide biosynthetic potential across abyssal sediments. Applied and Environmental Microbiology​​ (In review)

2025

E Abs, C Keuschnig, P Amato, C Bowler, E Capo, AB Chase, L Chavez-Rodriguez, A Dabengwa, T Dussarrat, T Guzman, LK Honeker, J Hultman, K Kusel, Z Li, A Mankowski, WJ Riley, SS Saleska, and L Wingate. 2025. Ideas and perspectives: Using meta-omics to unravel biogeochemical changes from cell to planetary scales. Biogeosciences [link]

2024

D Sweeney*, A Bogdanov*, AB Chase, G Castro-Falcón, A Trinidad-Javier, S Dahesh, V Nizet, and PR Jensen. 2024. Pattern-based genome mining guides discovery of the antibiotic indanopyrrole A from a marine streptomycete. Journal of Natural Products [link] [pdf]
P Abdoli, C Vulin, M Lepiz, AB Chase, C Weihe, and A Rodríguez-Verdugo. 2024. Substrate complexity buffers negative interactions in a synthetic community of leaf litter degraders. FEMS Microbiology Ecology [link] [pdf]
A Bogdanov, MN Salib, AB Chase, H Hammerlindl, MN Muskat, S Luedtke, EB da Silva, AJ O'Donoghue, LF Wu, SJ Altschuler, TF Molinski, and PR Jensen. ​2024. Small molecule in situ resin capture provides a compound first approach to natural product discovery. Nature Communications [link] [pdf]
Press coverage: New technique to explore oceanic microbes [SMU News]
                ​             Hope for new drugs arises from the sea [Scientific American]
E Abs, AB Chase, S Manzoni, P Ciais, and SD Allison. 2024. Microbial evolution - an under-appreciated driver of soil carbon cycling. Global Change Biology [link] [pdf]
D Sweeney, AB Chase, A Bogdanov, and PR Jensen. 2024. MAR4 Streptomyces: a unique resource for natural product discovery. Journal of Natural Products [link] [pdf]

2023

HW Singh, KE Creamer, AB Chase, LJ Klau, S Podell, and PR Jensen. 2023. Metagenomic data reveals type I polyketide synthase distributions across biomes. mSystems [link] [pdf]
AB Chase, A Bogdanov, AM Demko, and PR Jensen. 2023. Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments. The ISME Journal [link] [pdf]
Associated editorial: Chemical communication drive microbial community structure [Nature Microbiology]
JBH Martiny, AC Martiny, EL Brodie, AB Chase, A Rodriguez-Verdugo, KK Treseder, and SD Allison. 2023. Investigating the eco-evolutionary response of microbiomes to environmental change. Ecology Letters [link] [pdf]
E Abs, AB Chase, and SD Allison. 2023. How do soil microbes shape ecosystem biogeochemistry in the context of global change? Environmental Microbiology [link] [pdf]

2022

G Castro-Falcón, KE Creamer, AB Chase, MC Kim, D Sweeney, E Glukhov, W Fenical, and PR Jensen. 2022. The structure and candidate biosynthetic gene cluster of a manumycin-type metabolite from S. pacifica. Journal of Natural Products [link] [pdf]
​NC Scales, AB Chase, SS Finks, AA Malik, C Weihe, SD Allison, AC Martiny, and JBH Martiny. 2022. Differential response of bacterial microdiversity to simulated global change. Applied and Environmental Microbiology [link] [pdf]

2021

AB Chase, D Sweeney, MN Muskat, D Guillén-Matus, and PR Jensen. 2021. Vertical inheritance facilitates interspecies diversification in biosynthetic gene clusters and specialized metabolites. mBio [link] [pdf]
AB Chase, C Weihe, and JBH Martiny. 2021. Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient. Proceedings of the National Academy of Sciences [link] [pdf]
Press coverage: Soil bacteria evolve with climate change [UC Irvine]
Press coverage: Plucky soil bacteria keep pace with climate change [Inside Climate News]
Z Shang, ZE Ferris, D Sweeney, AB Chase, C Yuan, L Hou, E Older, D Xue, X Tang, W Zhang, P Nagarkatti, M Nagarkatti, TL Testerman, PR Jensen, and J Li. 2021. Grincamycins P−T: rearranged angucyclines from the marine sediment-derived Streptomyces sp. CNZ-748 inhibit cell lines of the rare cancer pseudomyxoma peritonei. Journal of Natural Products [link] [pdf]
​​A Oliver, AB Chase, C Weihe, SB Orchanian, SF Riedel, CL Hendrickson, M Lay, JM Sewall, JBH Martiny, and KL Whiteson. 2021. High-fiber, whole-food dietary intervention alters the human gut microbiome but not fecal SCFA. mSystems [link] [pdf]
Press coverage: ‘Fiber Force’ - high-fiber diet brings significant changes to human gut microbiome​ [UC Irvine]
​MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, G Aleti, JA Moghaddam, AT Aron, S Aziz, A Bauermeister, KD Bauman, M Baunach, C Beemelmanns, JM Beman, MV Berlanga-Clavero, AA Blacutt, HB Bode, A Boullie, A Brejnrod, TS Bugni, A Calteau, L Cao, VJ Carrion, R Castelo-Branco, S Chanana, AB Chase, MG Chevrette, et al. 2021. A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology [link] [pdf]

2020

B Román-Ponce, N Millán-Aguiñaga, D Guillén-Matus, AB Chase, JGM Ginigini, K Soapi, KD Feussner, PR Jensen, and ME Trujillo. 2020. Six novel species of the obligate marine actinobacterium Salinispora ... and emended description of the genus Salinispora.​ International Journal of Systematic and Evolutionary Microbiology [link] [pdf]
JM Sewall, A Oliver, K Denaro, AB Chase, C Weihe, M Lay, JBH Martiny, and KL Whiteson. 2020. Fiber Force: a fiber diet intervention in an advanced CURE course. Journal of Microbiology and Biology Education [link] [pdf]

2019

AB Chase, P Arevalo, EL Brodie, MF Polz, U Karaoz, and JBH Martiny. 2019. Maintenance of sympatric and allopatric populations in free-living terrestrial bacteria​. mBio [link​] [pdf]
​MBN Albright, AB Chase, and JBH Martiny. 2019. Experimental evidence that stochasticity contributes to bacterial composition and functioning in a decomposer community. mBio [link] [pdf]
T Gallagher, J Phan, A Oliver, AB Chase, WE England, S Wandro, C Hendrickson, SF Riedel, and KL Whiteson. 2019. Cystic fibrosis-associated S. maltophilia strain-specific adaptations and responses to pH. Journal of Bacteriology [link] [pdf]

2018

AB Chase, Z Gomez-Lunar, AE Lopez, J Li, SD Allison, AC Martiny, and JBH Martiny. 2018. Emergence of soil bacterial ecotypes along a climate gradient. Environmental Microbiology [link] [pdf]
AB Chase and JBH Martiny. 2018. The importance of resolving biogeographic patterns of microbial microdiversity. Microbiology Australia [link] [pdf]

2017

AB Chase, U Karaoz, EL Brodie, Z Gomez-Lunar, AC Martiny, and JBH Martiny. 2017. Microdiversity of an abundant terrestrial bacterium encompasses extensive variation in ecologically relevant traits. mBio [link] [pdf]
Associated commentary: McLaren and Callahan. 2018. In Nature, there is only diversity. mBio [link]
AB Chase, KL Dolan, DJ Mohamed, and JBH Martiny. 2017. Microbial Biodiversity. Encyclopedia of Biodiversity. Elsevier Press. Amsterdam. [link] [pdf]

2016

AB Chase, P Arevalo, MF Polz, R Berlemont, and JBH Martiny. 2016. Evidence for ecological flexibility in the cosmopolitan genus Curtobacterium. Frontiers in Microbiology [link] [pdf]
MB Nelson, AB Chase, JBH Martiny, R Stocker, J Nguyen, K Lloyd, RT Oshiro, DB Kearns, JP Schneider, PD Ringel, M Basler, CA Olson, HE Vuong, EY Hsiao, BRK Roller, M Ackermann, C Smillie, D Chien, E Alm, and AJ Jermy. The Microbial Olympics 2016. Nature Microbiology [link] [pdf]
List of Full Publications

ongoing work in advanced preparation

EM Morrison, AB Chase, C Weihe, JBH Martiny, and AC Martiny. Diel signal in microbial litter decomposition is driven by moisture cycle in an arid ecosystem.
D Sweeney, AB Chase, A Bogdanov, and PR Jensen. Paired 'omics insights into the chemically diverse MAR4 clade of marine Streptomyces.
J Li, AB Chase, G Piton, R Berlemont, C Weihe, MBN Albright, SI Glassman, JBH Martiny, SD Allison, EL Brodie, KK Treseder, and AC Martiny. Enzymatic trait dissimilarity drive spatiotemporal patterns of litter bacteria and fungi.
Picture
Picture
Picture
  • Home
  • Recent News
  • Research Projects
  • Lab Members
  • Publications
  • Blog
  • Contact