in review or preprint
S Adak, AB Chase, BS Moore, and AL Lukowski. Metagenomic identification of brominated indole biosynthetic machinery from cyanobacteria. Journal of Natural Products (In review)
HW Singh, J Gutleben, A Bogdanov, AB Chase, A Demko, S Podell, B Haley, and PR Jensen. Multi-omic assessment of polyketide biosynthetic potential across abyssal sediments. Applied and Environmental Microbiology (In review)
2025
E Abs, C Keuschnig, P Amato, C Bowler, E Capo, AB Chase, L Chavez-Rodriguez, A Dabengwa, T Dussarrat, T Guzman, LK Honeker, J Hultman, K Kusel, Z Li, A Mankowski, WJ Riley, SS Saleska, and L Wingate. 2025. Ideas and perspectives: Using meta-omics to unravel biogeochemical changes from cell to planetary scales. Biogeosciences [link]
2024
D Sweeney*, A Bogdanov*, AB Chase, G Castro-Falcón, A Trinidad-Javier, S Dahesh, V Nizet, and PR Jensen. 2024. Pattern-based genome mining guides discovery of the antibiotic indanopyrrole A from a marine streptomycete. Journal of Natural Products [link] [pdf]
P Abdoli, C Vulin, M Lepiz, AB Chase, C Weihe, and A Rodríguez-Verdugo. 2024. Substrate complexity buffers negative interactions in a synthetic community of leaf litter degraders. FEMS Microbiology Ecology [link] [pdf]
A Bogdanov, MN Salib, AB Chase, H Hammerlindl, MN Muskat, S Luedtke, EB da Silva, AJ O'Donoghue, LF Wu, SJ Altschuler, TF Molinski, and PR Jensen. 2024. Small molecule in situ resin capture provides a compound first approach to natural product discovery. Nature Communications [link] [pdf]
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Press coverage: New technique to explore oceanic microbes [SMU News]
Hope for new drugs arises from the sea [Scientific American] |
E Abs, AB Chase, S Manzoni, P Ciais, and SD Allison. 2024. Microbial evolution - an under-appreciated driver of soil carbon cycling. Global Change Biology [link] [pdf]
D Sweeney, AB Chase, A Bogdanov, and PR Jensen. 2024. MAR4 Streptomyces: a unique resource for natural product discovery. Journal of Natural Products [link] [pdf]
2023
HW Singh, KE Creamer, AB Chase, LJ Klau, S Podell, and PR Jensen. 2023. Metagenomic data reveals type I polyketide synthase distributions across biomes. mSystems [link] [pdf]
AB Chase, A Bogdanov, AM Demko, and PR Jensen. 2023. Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments. The ISME Journal [link] [pdf]
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Associated editorial: Chemical communication drive microbial community structure [Nature Microbiology]
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JBH Martiny, AC Martiny, EL Brodie, AB Chase, A Rodriguez-Verdugo, KK Treseder, and SD Allison. 2023. Investigating the eco-evolutionary response of microbiomes to environmental change. Ecology Letters [link] [pdf]
E Abs, AB Chase, and SD Allison. 2023. How do soil microbes shape ecosystem biogeochemistry in the context of global change? Environmental Microbiology [link] [pdf]
2022
G Castro-Falcón, KE Creamer, AB Chase, MC Kim, D Sweeney, E Glukhov, W Fenical, and PR Jensen. 2022. The structure and candidate biosynthetic gene cluster of a manumycin-type metabolite from S. pacifica. Journal of Natural Products [link] [pdf]
NC Scales, AB Chase, SS Finks, AA Malik, C Weihe, SD Allison, AC Martiny, and JBH Martiny. 2022. Differential response of bacterial microdiversity to simulated global change. Applied and Environmental Microbiology [link] [pdf]
2021
AB Chase, D Sweeney, MN Muskat, D Guillén-Matus, and PR Jensen. 2021. Vertical inheritance facilitates interspecies diversification in biosynthetic gene clusters and specialized metabolites. mBio [link] [pdf]
AB Chase, C Weihe, and JBH Martiny. 2021. Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient. Proceedings of the National Academy of Sciences [link] [pdf]
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Press coverage: Soil bacteria evolve with climate change [UC Irvine]
Press coverage: Plucky soil bacteria keep pace with climate change [Inside Climate News] |
Z Shang, ZE Ferris, D Sweeney, AB Chase, C Yuan, L Hou, E Older, D Xue, X Tang, W Zhang, P Nagarkatti, M Nagarkatti, TL Testerman, PR Jensen, and J Li. 2021. Grincamycins P−T: rearranged angucyclines from the marine sediment-derived Streptomyces sp. CNZ-748 inhibit cell lines of the rare cancer pseudomyxoma peritonei. Journal of Natural Products [link] [pdf]
A Oliver, AB Chase, C Weihe, SB Orchanian, SF Riedel, CL Hendrickson, M Lay, JM Sewall, JBH Martiny, and KL Whiteson. 2021. High-fiber, whole-food dietary intervention alters the human gut microbiome but not fecal SCFA. mSystems [link] [pdf]
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Press coverage: ‘Fiber Force’ - high-fiber diet brings significant changes to human gut microbiome [UC Irvine]
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MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, G Aleti, JA Moghaddam, AT Aron, S Aziz, A Bauermeister, KD Bauman, M Baunach, C Beemelmanns, JM Beman, MV Berlanga-Clavero, AA Blacutt, HB Bode, A Boullie, A Brejnrod, TS Bugni, A Calteau, L Cao, VJ Carrion, R Castelo-Branco, S Chanana, AB Chase, MG Chevrette, et al. 2021. A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology [link] [pdf]
2020
B Román-Ponce, N Millán-Aguiñaga, D Guillén-Matus, AB Chase, JGM Ginigini, K Soapi, KD Feussner, PR Jensen, and ME Trujillo. 2020. Six novel species of the obligate marine actinobacterium Salinispora ... and emended description of the genus Salinispora. International Journal of Systematic and Evolutionary Microbiology [link] [pdf]
JM Sewall, A Oliver, K Denaro, AB Chase, C Weihe, M Lay, JBH Martiny, and KL Whiteson. 2020. Fiber Force: a fiber diet intervention in an advanced CURE course. Journal of Microbiology and Biology Education [link] [pdf]
2019
AB Chase, P Arevalo, EL Brodie, MF Polz, U Karaoz, and JBH Martiny. 2019. Maintenance of sympatric and allopatric populations in free-living terrestrial bacteria. mBio [link] [pdf]
MBN Albright, AB Chase, and JBH Martiny. 2019. Experimental evidence that stochasticity contributes to bacterial composition and functioning in a decomposer community. mBio [link] [pdf]
T Gallagher, J Phan, A Oliver, AB Chase, WE England, S Wandro, C Hendrickson, SF Riedel, and KL Whiteson. 2019. Cystic fibrosis-associated S. maltophilia strain-specific adaptations and responses to pH. Journal of Bacteriology [link] [pdf]
2018
AB Chase, Z Gomez-Lunar, AE Lopez, J Li, SD Allison, AC Martiny, and JBH Martiny. 2018. Emergence of soil bacterial ecotypes along a climate gradient. Environmental Microbiology [link] [pdf]
AB Chase and JBH Martiny. 2018. The importance of resolving biogeographic patterns of microbial microdiversity. Microbiology Australia [link] [pdf]
2017
AB Chase, U Karaoz, EL Brodie, Z Gomez-Lunar, AC Martiny, and JBH Martiny. 2017. Microdiversity of an abundant terrestrial bacterium encompasses extensive variation in ecologically relevant traits. mBio [link] [pdf]
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Associated commentary: McLaren and Callahan. 2018. In Nature, there is only diversity. mBio [link]
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AB Chase, KL Dolan, DJ Mohamed, and JBH Martiny. 2017. Microbial Biodiversity. Encyclopedia of Biodiversity. Elsevier Press. Amsterdam. [link] [pdf]
2016
ongoing work in advanced preparation
EM Morrison, AB Chase, C Weihe, JBH Martiny, and AC Martiny. Diel signal in microbial litter decomposition is driven by moisture cycle in an arid ecosystem.
I Burkhardt, N Grayson, J Gutleben, PR Jensen, AB Chase, and BS Moore. Characterization and evolution of terpene cyclases from deep sea octocorals. In review at Proceedings of the National Academy of Sciences.
D Sweeney, AB Chase, A Bogdanov, and PR Jensen. Paired 'omics insights into the chemically diverse MAR4 clade of marine Streptomyces.
J Li, AB Chase, G Piton, R Berlemont, C Weihe, MBN Albright, SI Glassman, JBH Martiny, SD Allison, EL Brodie, KK Treseder, and AC Martiny. Enzymatic trait dissimilarity drive spatiotemporal patterns of litter bacteria and fungi.
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